Genetic (Karyotype) Assignment

I have a genetic assignment due by 11pm today EST. please if you can not deliver do not attempt. Attached here is everything you need. PLEASE Follow guideline before you begin. As you will notice, I started doing the assignment.

BIOL209: General Genetics Laboratory

Examining Human Chromosome Disorders

 

PRE-LAB ASSIGNMENT:

Students are expected to read all pages before coming to the lab to complete the experiments.

Print this entire lab packet and bring it to the laboratory.

Objectives:

After completing this laboratory assignment, students will be able to:

1. Distinguish between the ways to identify chromosomal abnormalities

2. Detect chromosomal abnormalities in a karyotype

 

Introduction:

Karyotyping is the process of pairing and ordering all the chromosomes of an organism, thus providing a genome-wide snapshot of an individual’s chromosomes. Karyotypes are prepared using standardized staining procedures that reveal characteristic structural features for each chromosome. Clinical cytogeneticists analyze human karyotypes to detect gross genetic changes—anomalies involving several megabases or more of DNA. Karyotypes can reveal changes in chromosome number associated with aneuploid conditions, such as trisomy 21 (Down syndrome). Careful analysis of karyotypes can also reveal more subtle structural changes, such as chromosomal deletions, duplications, translocations, or inversions. In fact, as medical genetics becomes increasingly integrated with clinical medicine, karyotypes are becoming a source of diagnostic information for specific birth defects, genetic disorders, and even cancers. Adapted from: https://www.nature.com/scitable/topicpage/karyotyping-for-chromosomal-abnormalities-298

 

Experimental Overview:

You and your partner will take on the role of cytogeneticists working in a hospital. Three case studies will be given to you one at a time for review, along with a set of patient chromosomes. You and your partner will arrange the chromosomes into a completed karyotype on a prepared board. After you have successfully constructed the karyotype, you will analyze it and diagnose each patient. Your patient may have a chromosomal abnormalities or a normal karyotype. Be careful and use your observational skills—things are not always as simple as they seem (especially Case K).

 

Protocol:

1. Obtain a Chromoscan board containing a case study and set of patient chromosomes. Each case study has a Case ID Letter and a unique color. Confirm that the chromosomes match the board.

2. Read the case study found on the left side of the board.

3. On the Cytogenetics Report, record the patient information, including name, case ID, reason for referral, patient age, and source of the cells.

4. To make the process of the karyotype assembly less complex, one of each of the homologous chromosomes is already illustrated on the board. Identify the other homolog and place it on the board in the proper position.

5. Once the karyotype is completed, analyze it for chromosomal anomalies, paying particular attention to chromosome number and structure.

6. Record chromosome number, gender, and chromosomal findings on the Cytogenetics Report.

7. Use the internet to determine the diagnosis of the patient.

8. Return the ALL the chromosome decals to the cryostorage region of the Chromoscan board in RANDOM ORDER, to prepare the board for the next group’s use.

9. Obtain another board and complete the same steps until you have completed a total of 3 case studies.

Instructions for the lab report:

· Assume the role of a Cytogenetist, write out a daily report for the work you accomplished today. It should include but is not limited to:

· A description of how an actual karyotype is constructed. It should be detailed enough that someone else can use your protocol to construct a karyotype.

· DO NOT write the protocol that you followed for this lab.

· Include the three cytogenetic reports that you completed today.

 

· Assume the role of a Genetic Counselor

· Choose one of the case studies with an abnormal diagnosis and research it in further detail.

· Create notes for the patient and/or the patient’s caregiver with additional implications of the diagnosis, including life expectancy, complications, available treatments, support group information, etc.

· Do not forget to include in-text citations and a “Works Cited” or References page.

 

 

 

 

 

 

Data Sheet:

 

Cytogenetics Reports for G-Banded Karyotype-III
Patient Name Case ID Age
Why is the patient being referred for karyotyping? Source of Cells for Karyotyping

____ Blood

____ Amniocytes

____ Chorionic Villi

____ Other (specify) __________________

Total Number of Chromosomes Observed Gender
Chromosomal Findings

____ no observable chromosomal abnormalities

____ monosomy (chromosome #____)

____ trisomy (chromosome #____)

____ deletion (chromosome #____, arm _____)

____ insertion (chromosome #____, arm _____)

____ translocation (chromosome #s____ and ____)

____ inversion (chromosome #____, arm(s) _____)

____other (explain)___________________________

Diagnosis

 

 

 

 

 

 

 

 

 

Source of Diagnosis

Cytogenetics Reports for G-Banded Karyotype-I
Patient Name Case ID Age
Why is the patient being referred for karyotyping? Source of Cells for Karyotyping

____ Blood

____ Amniocytes

____ Chorionic Villi

____ Other (specify) __________________

Total Number of Chromosomes Observed Gender
Chromosomal Findings

____ no observable chromosomal abnormalities

____ monosomy (chromosome #____)

____ trisomy (chromosome #____)

____ deletion (chromosome #____, arm _____)

____ insertion (chromosome #____, arm _____)

____ translocation (chromosome #s____ and ____)

____ inversion (chromosome #____, arm(s) _____)

____other (explain)___________________________

Diagnosis

 

 

 

 

 

 

 

 

 

Source of Diagnosis

 

 

Cytogenetics Reports for G-Banded Karyotype-II
Patient Name Case ID Age
Why is the patient being referred for karyotyping? Source of Cells for Karyotyping

____ Blood

____ Amniocytes

____ Chorionic Villi

____ Other (specify) __________________

Total Number of Chromosomes Observed Gender
Chromosomal Findings

____ no observable chromosomal abnormalities

____ monosomy (chromosome #____)

____ trisomy (chromosome #____)

____ deletion (chromosome #____, arm _____)

____ insertion (chromosome #____, arm _____)

____ translocation (chromosome #s____ and ____)

____ inversion (chromosome #____, arm(s) _____)

____other (explain)___________________________

Diagnosis

 

 

 

 

 

 

 

 

 

Source of Diagnosis

 

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Cellcycle Overview

Click on the link provided below.

http://media.hhmi.org/biointeractive/click/cellcycle/?_ga=1.12670647.1279517233.1480957413

 

Download the worksheet from the assignment folder.  Complete as you progress through the lesson.

 

Read the overview in its own box.  Click on each “checkpoint” for the 5 phases of the Cycle. The phases are M, G1, G0, S, and G2. The reading for each phase appears in the box to the left.

When each has been completed, or clicked, the second title in the center of the cycle diagram, Cell Cycle Regulators and Cancer, will light up.

Click on this title, for the second part to appear.

 

Click on the Cancer Overview, and read the information in the box. Be sure to click through all 5 pages.

 

Now click and complete the Regulators Overview, clicking on each of the stimulating and inhibitory icons in each phase.

Answer any questions in the worksheet that apply.

 

Upload the completed worksheet into the assignment folder.

Due date for the assignment is in the syllabus. Proper grammar and spelling is expected.

 

 

www.BioInteractive.org                                        Published  February  2016

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THE EUKARYOTIC CELL CYCLE AND CANCER: AN OVERVIEW

ABOUT THIS WORKSHEET This worksheet complements the Click and Learn “The Eukaryotic Cell Cycle and Cancer” and is intended as a straightforward introduction to the cell cycle and how that relates to cancer. For a more comprehensive student worksheet, please see the in depth version.

PROCEDURE Read through the Click and Learn at (http://www.hhmi.org/biointeractive/eukaryotic-cell-cycle-and- cancer) to learn about the cell cycle. Answer the questions below. Click on the “Background” tab on the right side. Read the information and watch the videos. 1. Why is cell division important for both unicellular and multicellular organisms?

 

2. Why does cell division remain important to an adult organism even after it is fully developed?

3. Cells divide, differentiate, or die. What is differentiation?

4. What is apoptosis? What is its purpose?

5. What are cell cycle regulators?

6. What happens if cell cycle regulators don’t function properly?

 

 

 

 

 

 

www.BioInteractive.org                                        Published  February  2016

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Click on the purple section labeled “Cell Cycle Phases” as well as the words “Mitosis” and “Interphase” to read an overview of the cell cycle. You can also click on the various phases. 7. Cells go through periods of growth and division. Cell division occurs during _______________.

8. The rest of the cell cycle is called interphase, during which _____________________________

_____________________________________________________________________________.

9. Fill in the details about what happens during the three phases of interphase labeled in the

diagram.

 

 

 

 

10. In general, what is the purpose of a checkpoint in the cell cycle?

 

 

 

 

 

 

www.BioInteractive.org                                        Published  February  2016

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11. What is the G0 phase of the cell cycle? Which factors determine whether a cell enters G0? Can cells leave G0?

Click on “Cell Cycle Regulators and Cancer” in the center purple circle. Read the Regulators Overview and then read through the Cancer Overview and watch the videos. 12. What are cell cycle regulators?

 

a. Stimulatory proteins are encoded by _________________________________. Examples include: ______________________________________________________

b. Inhibitory proteins are encoded by ___________________________________________. Examples include: ______________________________________________________

13. Cancer is the result of an improperly regulated cell cycle. Describe two reasons why cells can form tumors.

14. In some types of colon cancer, stem cells have a mutation in the APC gene. What happens if the APC gene is mutated?

15. Normally, proto-oncogenes stimulate the cell cycle. What are oncogenes and how do they affect the cell cycle?

 

 

 

 

 

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a. To cause cancer, proto-oncogenes require _________ allele(s) to be mutated and therefore are considered ____________________. The mutation results in a __________ of function.

 

16. Normally, tumor suppressor genes inhibit the cell cycle. How do mutated tumor suppressor genes affect the cell cycle?

a. To cause cancer, tumor suppressor genes require _________ allele(s) to be mutated and therefore are considered ____________________. The mutation results in a __________ of function.

 
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Population Genetics

Population Genetics

PRE-LAB QUESTIONS

1. What is the gene pool of the population depicted in the pie chart?

 

2. What is the gene frequency (use the Hardy-Weinberg equation)?

3. What are two types of extreme genetic drift?

4. What are more subtle contributors to genetic drift?

© eScience Labs, 2021

 

 

Population Genetics

EXPERIMENT 1: GENETIC VARIATION

Post-Lab Questions

Part 1

1. What is the initial gene pool of beaker #1?

2. What is the initial gene pool of beaker #2?

3. What is the initial gene frequency of beaker #1?

4. What is the initial gene frequency of beaker #2?

5. What can you say about the genetic variation between these populations?

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

Part 2

1. What is the new gene pool of beaker #1?

2. What is the new gene pool of beaker #2?

3. What is the new gene frequency of beaker #1?

4. What is the new gene frequency of beaker #2?

5. What can you say about the genetic variation between these populations after mixing?

6. What principle is being explored through the combination of the beads in beaker #1 and beaker #2?

© eScience Labs, 2021

 

 

Population Genetics

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

© eScience Labs, 2021

 

 

Population Genetics

EXPERIMENT 2: GENETIC DRIFT

Post-Lab Questions

1. What principle is being explored through the destruction of a large portion of the population?

2. What observations can you make regarding the gene pool and gene frequency of the surviving individuals? How does this change with multiple trials?

3. Do the results vary between the populations represented by beakers #1 and #2? Why or why not?

4. How will the removal of individuals from the different populations affect the genotypes of future generations? How is this different from the genotypes that would have resulted if those individuals had not been removed?

5. Suppose you have a population of 300 butterflies with the gene for color expressed as Oo (O = orange; o = yellow). What is the gene pool for this population?

6. Now suppose you have 300 eggs, but only 70% of those eggs become caterpillars, and only 80% of the caterpillars become adult butterflies. What is the gene pool for this adult population? (For simplicity, assume that all butterflies survive to the next year in this example.)

7. Suppose you have a population of 150 butterflies, but a wildfire devastates the population and only 24 butterflies survive. What percent does the gene pool decrease by?

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

© eScience Labs, 2021

 

 

Population Genetics

EXPERIMENT 3: STOCHASTIC EVENTS

Post-Lab Questions

1. What observations can you make regarding the gene pool and gene frequency of the founding individuals?

2. Do these results vary between beakers #1 and #2? Why or why not?

3. What observations can you make about the genetic variation between the parent and founding populations? How does the source of the founding population (Beaker 1 or Beaker 2) influence these results?

4. How will future generations from Beaker 3 differ from those of their parent populations?

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

© eScience Labs, 2021

 

 

Population Genetics

EXPERIMENT 4: NATURAL SELECTION

Experimental Results

Distribution of colors after Step 6:

a. Blue:

b. Red:

Do you observe a selective advantage for the red or blue beads? Why?

Distribution of colors after Step 7:

a. Blue:

b. Red:

Post-Lab Questions

1. How did the distribution of phenotypes change over time in the two different environments?

2. For the two different environments, is there a selective advantage or disadvantage for the red and/or blue phenotypes?

3. What phenotypic results for each environment would you predict if starting with the following population sizes?

a. 1000:

b. 100:

c. 10:

4. What would occur if you added 10 yellow beads to Step 1 that were never predated upon?

© eScience Labs, 2021

 

 

Population Genetics

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

© eScience Labs, 2021

 

 

Population Genetics

EXPERIMENT 5: SICKLE CELL ANEMIA INHERITANCE PATTERNS

Post-Lab Questions

1. What was the ratio of alleles at the beginning of this exercise and at the end of this exercise? Did the ratio change? If so, in favor of which allele?

2. Have any alleles been selected against?

3. Given enough generations, would you expect one of these alleles to completely disappear from the population? Why or why not?

4. This exercise assumes that there is no genetic advantage to being homozygous dominant or heterozygous for the sickle cell allele. Do some research on these alleles. Is this the case in the real world? Why or why not?

5. How would your response to Question 4 change the ratio of alleles and genotypes compared to your results in this exercise?

Reflection (Discuss what you have learned by doing this experiment. How have your ideas changed? Do you have any new questions? What connections did you make between the lab and lecture?):

© eScience Labs, 2021

 

  • Pre-Lab Questions
  • Experiment 1: Genetic Variation
    • Post-Lab Questions
    • Part 1
    • Part 2
  • Experiment 2: Genetic Drift
    • Post-Lab Questions
  • Experiment 3: Stochastic Events
    • Post-Lab Questions
  • Experiment 4: Natural Selection
    • Experimental Results
    • Post-Lab Questions
  • Experiment 5: Sickle Cell Anemia Inheritance Patterns
    • Post-Lab Questions

 
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SC160 Basic Biology

ASSIGNMENT 08

 

SC160 Basic Biology

 

Directions:  Be sure to save an electronic copy of your answer before submitting it to Ashworth College for grading. Unless otherwise stated, answer in complete sentences, and be sure to use correct English, spelling and grammar. Sources must be cited in APA format. Your response should be four (4) double-spaced pages; refer to the “Assignment Format” page located on the Course Home page for specific format requirements.

 

 

 

Discuss the applications of each of following in biology today and include three examples of each with a brief description.

 

 

 

  1. DNA in forensic science
  2. Population evolution and microbial life
  3. Biological diversity evolution
  4. Plant and animal evolution
  5. Population growth
  6. Biomes and ecosystems

 

 

ASSIGNMENT 08

SC160 Basic Biology

Directions: Be sure to save an electronic copy of your answer before submitting it to Ashworth College for grading. Unless otherwise stated, answer in complete sentences, and be sure to use correct English, spelling and grammar. Sources must be cited in APA format. Your response should be four (4) double-spaced pages; refer to the “Assignment Format” page located on the Course Home page for specific format requirements.

 

Discuss the applications of each of following in biology today and include three examples of each with a brief description.

 

a. DNA in forensic science

b. Population evolution and microbial life

c. Biological diversity evolution

d. Plant and animal evolution

e. Population growth

f. Biomes and ecosystems

 

Grading Rubric

 

Please refer to the rubric on the next page for the grading criteria for this assignment.

 

 

CATEGORYExemplarySatisfactoryUnsatisfactoryUnacceptable

10 points 8 points 5 points 2 points

Student provides a clear,

logical description of the

application of DNA in

forensic science, along with

at least 3 clear, logical

examples.

Student provides a mostly

clear, logical description of

the application of DNA in

forensic science, along with

at least 2 mostly clear,

logical examples.

Student provides a partially

clear, logical description of

the application of DNA in

forensic science, along with

at least 2 partially clear,

logical examples.

Student provides a weak or

unclear description of the

application of DNA in

forensic science, along

with at least 1 weak or

unclear example.

15 points 12 points 8 points 5 points

Student provides a clear,

logical description of the

application of population

evolution and microbial life,

along with at least 3 clear,

logical examples.

Student provides a mostly

clear, logical description of

the application of

population evolution and

microbial life, along with at

least 2 mostly clear, logical

examples.

Student provides a partially

clear, logical description of

the application of

population evolution and

microbial life, along with at

least 2 partially clear, logical

examples.

Student provides a weak or

unclear description of the

application of population

evolution and microbial

life, along with at least 1

weak or unclear example.

10 points 8 points 5 points 2 points

Student provides a clear,

logical description of the

application of biological

diversity evolution, along

with at least 3 clear, logical

examples.

Student provides a mostly

clear, logical description of

the application of biological

diversity evolution, along

with at least 2 mostly clear,

logical examples.

Student provides a partially

clear, logical description of

the application of biological

diversity evolution, along

with at least 2 partially

clear, logical examples.

Student provides a weak or

unclear description of the

application of biological

diversity evolution, along

with at least 1 weak or

unclear example.

15 points 12 points 8 points 5 points

Student provides a clear,

logical description of the

application of plant and

animal evolution, along with

at least 3 clear, logical

examples.

Student provides a mostly

clear, logical description of

the application of plant and

animal evolution, along with

at least 2 mostly clear,

logical examples.

Student provides a partially

clear, logical description of

the application of plant and

animal evolution, along

with at least 2 partially

clear, logical examples.

Student provides a weak or

unclear description of the

application of plant and

animal evolution, along

with at least 1 weak or

unclear example.

10 points 8 points 5 points 2 points

Student provides a clear,

logical description of the

application of population

growth, along with at least 3

clear, logical examples.

Student provides a mostly

clear, logical description of

the application of

population growth, along

with at least 2 mostly clear,

logical examples.

Student provides a partially

clear, logical description of

the application of

population growth, along

with at least 2 partially

clear, logical examples.

Student provides a weak or

unclear description of the

application of population

growth, along with at least

1 weak or unclear

example.

15 points 12 points 8 points 5 points

Student provides a clear,

logical description of the

application of biomes and

ecosystems, along with at

least 3 clear, logical

examples.

Student provides a mostly

clear, logical description of

the application of biomes

and ecosystems, along with

at least 2 mostly clear,

logical examples.

Student provides a partially

clear, logical description of

the application of biomes

and ecosystems, along with

at least 2 partially clear,

logical examples.

Student provides a weak or

unclear description of the

application of biomes and

ecosystems, along with at

least 1 weak or unclear

example.

10 points 8 points 5 points 2 points

Student makes no errors in

grammar or spelling that

distract the reader from the

content.

Student makes 1-2 errors in

grammar or spelling that

distract the reader from the

content.

Student makes 3-4 errors in

grammar or spelling that

distract the reader from the

content.

Student makes more than

4 errors in grammar or

spelling that distract the

reader from the content.

DNA in forensic

science (10 points)

Biological diversity

evolution (10 points)

Plant and animal

evolution (15 points)

Mechanics –

Grammar,

Punctuation,

Spelling (10 Points)

Biomes and

ecosystems (15

points)

Population

evolution and

microbial life (15

points)

Population growth

(10 points)

15 points 12 points 8 points 5 points

The paper is written in

proper format. All sources

used for quotes and facts are

credible and cited correctly.

Excellent organization,

including a variety of

thoughtful transitions.

The paper is written in

proper format with only 1-2

errors. All sources used for

quotes and facts are credible

and most are cited correctly.

Adequate organization

includes a variety of

appropriate transitions.

The paper is written in

proper format with only 3-5

errors. Most sources used

for quotes and facts are

credible and cited correctly.

Essay is poorly organized,

but may include a few

effective transitions.

The paper is not written in

proper format. Many

sources used for quotes

and facts are less than

credible (suspect) and/or

are not cited correctly.

Essay is disorganized and

does not include effective

transitions.

Format – APA

Format, Citations,

Organization,

Transitions (15

Points)

 
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