BIO 299 Pathology/Microbial-Environmental Interactions Paper

BIO 299 Pathology/Microbial-Environmental Interactions Paper

You will pick a microorganism for your paper on pathology or microbe-environment interactions. The organism cannot be one of the ones your instructor goes over during lecture listed in the syllabus. Select a pathogen/microbe from current events that is an emerging or reemerging concern to you or people in your area. Provide local epidemiological data/statistics for the organism.

Note this cannot be covid-19, Ebola, flu, clostridium botulinum, Hepatitis C, Anthrax, MRSA. These has been discussed already. Choose something in Africa or the US. 

Your paper must include:

Introduction to the organism (structure, cell type, morphology, metabolic requirements, natural reservoir, history, etc.)

Introduction to the disease(s) caused by the organism (epidemiology, signs, symptoms, etc.) OR introduction to the environmental impact of the organism

List and describe factors employed by the organism to assist in its growth, reproduction, culture conditions, host/pathogen interactions and/or virulence. (e.g., nitrogen fixation, symbiotic interactions etc.) Categorize virulence factors by mechanisms of action (Immunity Avoidance, Tissue/Cell Lysis, Colonization/Spread)

Discussion of treatment/prevention options for the disease(s) caused by the organism (Antibiotics or other chemotherapeutics given as part of treatment and their mechanisms of action, Vaccines available and type)

The paper should be a minimum of 5 pages of relevant and informative material that covers all of the content and requirements listed below and in the rubric. The 5 pages does not include the title and reference pages. The paper should thoroughly inform the reader.

APA format. This includes citations and references.

Title page must have a title, student name, instructor name, course title, and date.

No direct quotes; put information into your own words or paraphrase.

Minimum of three (3) primary and at least two (2) secondary scholarly sources, plus any other references used. You also must include in-text citations.

1-inch margins

Double-spaced

12 point, Times New Roman

After uploading to Turnitin, your paper will be scored for similarity. Anything above 18% similarity should be worked on further and uploaded again before the due date.

Over 18 % similarity and/or no references will result in an automatic zero on the paper.

 
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MICRO BIOLOGY

PART A

Hepatitis C is a chronic liver infection that can be either silent (with no noticeable symptoms) or debilitating. Either way, 80% of infected persons experience continuing liver destruction. Chronic hepatitis C infection is the leading cause of liver transplants in the United States. The virus that causes it is blood borne, and therefore patients who undergo frequent procedures involving transfer of blood are particularly susceptible to infection. Kidney dialysis patients belong to this group. In 2008, a for-profit hemodialysis facility in New York was shut down after nine of its patients were confirmed as having become infected with hepatitis C while undergoing hemodialysis treatments there between 2001 and 2008.

When the investigation was conducted in 2008, investigators found that 20 of the facility’s 162 patients had been documented with hepatitis C infection at the time they began their association with the clinic. All the current patients were then offered hepatitis C testing, to determine how many had acquired hepatitis C during the time they were receiving treatment at the clinic. They were considered positive if enzyme-linked immunosorbent assay (ELISA) tests showed the presence of antibodies to the hepatitis C virus.

Health officials did not test the workers at the hemodialysis facility for hepatitis C because they did not view them as likely sources of the nine new infections. Why not?

Why do you think patients were tested for antibody to the virus instead of for the presence of the virus itself?

Ref.: Cowan, M. K. (2014) (4th Ed.). Microbiology: A Systems Approach, McGraw Hill

PART B

Summary:

Directions for the students: There are 4 essay questions. Please be sure to complete all of them with thorough substantive responses. Current APA Citations are required for all responses.

1. Precisely what is microbial death?

2. Why does a population of microbes not die instantaneously when exposed to an antimicrobial agent?

3. Explain what is wrong with this statement: “Prior to vaccination, the patient’s skin was sterilized with alcohol.” What would be a more correct wording?

4. Conduct additional research on the use of triclosan and other chemical agents in antimicrobial products today. Develop an opinion on whether this process should continue, providing evidence and citations to support your stance.

PART A

Hepatitis C is a chronic liver infection that can be either silent (with no noticeable symptoms) or debilitating. Either way, 80% of infected persons experience continuing liver destruction. Chronic hepatitis C infection is the leading cause of liver transplants in the United States. The virus that causes it is blood borne, and therefore patients who undergo frequent procedures involving transfer of blood are particularly susceptible to infection. Kidney dialysis patients belong to this group. In 2008, a for-profit hemodialysis facility in New York was shut down after nine of its patients were confirmed as having become infected with hepatitis C while undergoing hemodialysis treatments there between 2001 and 2008.

When the investigation was conducted in 2008, investigators found that 20 of the facility’s 162 patients had been documented with hepatitis C infection at the time they began their association with the clinic. All the current patients were then offered hepatitis C testing, to determine how many had acquired hepatitis C during the time they were receiving treatment at the clinic. They were considered positive if enzyme-linked immunosorbent assay (ELISA) tests showed the presence of antibodies to the hepatitis C virus.

Health officials did not test the workers at the hemodialysis facility for hepatitis C because they did not view them as likely sources of the nine new infections. Why not?

Why do you think patients were tested for antibody to the virus instead of for the presence of the virus itself?

Ref.: Cowan, M. K. (2014) (4th Ed.). Microbiology: A Systems Approach, McGraw Hill

 

PART B

Summary:

Directions for the students: There are 4 essay questions. Please be sure to complete all of them with thorough substantive responses. Current APA Citations are required for all responses.

 

1. Precisely what is microbial death?

2. Why does a population of microbes not die instantaneously when exposed to an antimicrobial agent?

3. Explain what is wrong with this statement: “Prior to vaccination, the patient’s skin was sterilized with alcohol.” What would be a more correct wording?

4. Conduct additional research on the use of triclosan and other chemical agents in antimicrobial products today. Develop an opinion on whether this process should continue, providing evidence and citations to support your stance.

 
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Health Care Organizations

Health care organizations continually face challenges from various regulatory and government agencies while also being bound by Managed Care Organization (MCO) standards. View the video located in the study materials entitled “College of Nursing and Health Care Professions: Do We Know What Our Future Is?” for insight into the challenges of health care reform. Based on the video, describe two key reform factors that you believe will need to be addressed by future health care workers or leaders and explain why. (Note: You can download slides from this video for ease of review in developing your forum response). Additionally, what role does adherence to MCO standards play in your future health care vision?Health care organizations continually face challenges from various regulatory and government agencies while also being bound by Managed Care Organization (MCO) standards. View the video located in the study materials entitled “College of Nursing and Health Care Professions: Do We Know What Our Future Is?” for insight into the challenges of health care reform. Based on the video, describe two key reform factors that you believe will need to be addressed by future health care workers or leaders and explain why. (Note: You can download slides from this video for ease of review in developing your forum response). Additionally, what role does adherence to MCO standards play in your future health care vision?

 
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Diffusion – Introduction

Diffusion – Introduction

This unit we are learning about the structure and function of cells. The plasma membrane, for example, is an important structure of all cells and it is responsible for regulating the passage of materials into and out of the cell. Plasma membranes are differentially (selectively) permeable, meaning some substances are allowed to enter and exit the cell, while the movement of other materials is either carefully regulated or blocked. Two ways in which materials can move freely across the cell membrane are diffusion and osmosis.

Diffusion is the movement of solutes (material dissolved in liquid) from an area of high concentration to an area of low concentration. If these areas are separated by a membrane, that membrane may or may not be permeable to the solute. The membrane is always permeable to water though and the movement of water across a membrane is a special form of diffusion called osmosis.

We will be using dialysis tubing to simulate a semipermeable membrane. This tubing allows small molecules (e.g., water, ions, glucose) to pass while preventing large molecules (e.g., macromolecules like proteins, starch, glycogen) from moving across.  Be sure you have read over the suggested material before starting this exercise and that you have reviewed the following video:

Diffusion and Osmosis (Links to an external site.)

When you are ready to begin, open the Unit 3 Experiment Answer Sheet and answer the questions associated with the first exercise.

Osmosis – Introduction

In our second exercise this unit, we will to take a closer look at osmosis; the movement of water across a membrane. The direction water moves depends on the relative concentration of solute molecules on either side of the membrane (in this case, these solutes are not able to cross the membrane). Furthermore, the presence or absence of cell walls (e.g., in plant cells) influences how cells respond to osmotic fluctuations in their environment. This exercise will examine the forces that determine whether water moves into or out of a cell.

We will be using the following website in this exercise. Be sure you are able to access and use this website before starting.

The Biology Place. No Date. Osmosis: Movement of Water across Membranes (Links to an external site.)

Open the Unit 3 Experiment Answer Sheet and complete the questions for this exercise.

WEEK 3 EXPERIMENT ANSWER SHEET Please submit to the Week 3 Experiment dropbox no later than Sunday midnight.

SUMMARY OF ACTIVITIES FOR WEEK 1 EXPERIMENT ASSIGNMENT

· Experiment 3 Exercise 1 – Diffusion: Movement of Solutes across a Membrane

· Experiment 3 Exercise 2 – Osmosis: Movement of Water across a Membrane

Experiment 3 Exercise 1: Diffusion – Movement of Solutes across a Membrane

We will be using dialysis tubing to simulate a semipermeable membrane. This tubing allows small molecules (e.g., water, ions, glucose) to pass while preventing large molecules (e.g., macromolecules like proteins, starch, glycogen) from moving across. Be sure you have read over the suggested material before starting this exercise and that you have reviewed the following video: https://www.youtube.com/watch?v=zuNMVzTeCtw

Experimental Design

A. The dialysis bag we will use is permeable to water and small molecules (e.g., less than 500 g/mol) and impermeable to large molecules (e.g., more than 500 g/mol).

B. The dialysis bag is filled with a mixture of glucose (molecular weight = 180 g/mol) and protein (molecular weight = 10,000 g/mol) dissolved in water. A small subsample of the dialysis bag contents is saved and will be used in Step 4.

C. The dialysis bag is then placed into a beaker of water. A small subsample of beaker water is also saved and is to be used in Step 4 as well.

image1.png

The presence or absence of glucose and protein will be determined using indicators. Indicators change colors in the presence certain materials. The two tests that we’ll use are the Benedict’s test for simple sugars (e.g., glucose) and the Biuret test for the presence of proteins.

· If glucose is present, the Benedict’s indicator will turn green. If no glucose is present, the solution will be blue.

· If protein is present, the Biuret indicator will turn violet. If the solution remains clear, then no protein is present.

D. The subsample of dialysis bag solution and the beaker water are tested for the presence of glucose and protein. See Table 1 below for the results.

E. The dialysis bag is then left in the beaker of water for 60 minutes.

F. At the end of 60 minutes, the dialysis bag solution and the beaker water are again tested for the presence of glucose and protein. See Table 1 below for the results.

Table 1. Results of testing of the dialysis bag and beaker contents at the beginning and end of the Experiment.

  Test for Glucose Test for Protein
  Beginning End Beginning End
Dialysis Bag Green Green Violet Violet
Beaker Blue Green Clear Clear

Questions

1. Summarize the results regarding the presence (+) or absence (-) of glucose and protein in the dialysis bag and beaker in Table 2 below (4 pts):

Table 2.

  Glucose Protein
  Beginning End Beginning End
Dialysis Bag        
Beaker        

2. Explain the movement or lack of movement of protein and glucose across the dialysis bag membrane (4 pts)

3. Which solution, that in the bag or that in the beaker, is hypotonic compared with the protein solution (2 pts)?

4. What factors affect the movement of molecules across a semipermeable membrane? Which factor plays the greatest role in biological systems (4 pts)?

5. Briefly explain what active transport is and how it differs from passive transport, especially in terms of concentration gradients (4 pts).

 

Experiment 3 Exercise 2: Osmosis – The Movement of Water across a Membrane

Before starting, let’s see what you know about the terms hypotonicisotonic and hypertonic. Examine the diagrams below. Note that the small green circles represent dissolved solutes like salt, glucose, and amino acids. You can assume that the additional space surrounding the solutes is water and that the tan area is INSIDE the cell.

image2.png

Question

1. Define each term below in terms of solute concentration outside compared to the inside of the cell. You do not need to explain which direction water will move (3 pts).

a. Hypotonic –

b. Isotonic –

c. Hypertonic –

Procedure

A. Open the following website to get started:

The Biology Place. No Date. Osmosis: Movement of Water across Membranes http://www.phschool.com/science/biology_place/biocoach/biomembrane1/osmosis.html

B. Read over the information presented and then Click on image3.png

C. Then, Click on image4.png. Read through the information presented and be sure to click on Animate beneath the illustration.

Questions

2. What concentration of salt is isotonic to animal cells (1 pts)?

3. When cells are in isotonic solution, is there movement of water into or out of the cell? If so, describe this movement (3 pts).

 

Procedure (continued)

D. Click on image5.png.

E. Read through the information presented and be sure to click on Animate beneath the illustration. When ready, answer the following question.

Question

4. Describe the net movement of water molecules when cells are placed in a hypotonic solution. Explain why water moves this way (3 pts).

 

Procedure (continued)

F. Click on image6.png

G. Read through the information presented and be sure to click on Animate beneath each of the illustrations. Answer the following questions. Your answers should incorporate the terminology used in the animations.

Questions

5. What happens to an animal cell when placed in a hypotonic solution (2 pts)?

6. What happens to plant cells when placed in a hypotonic solution? What accounts for the difference in outcomes between animal cells and plant cells (3 pts)?

 

Procedure (continued)

H. Click on image7.png

I. Then, Click on image8.png. Read through the information presented and be sure to click on Animate beneath the illustration. Answer the following question.

Question

7. Describe the net movement of water molecules when cells are placed in a hypertonic solution. Explain why water moves this way (3 pts).

 

Procedure (continued)

J. Click on image9.png

K. Read through the information presented and be sure to click on Animate beneath the illustration. Answer the following questions.

Questions

8. Compare and contrast what happens to plant and animal cells when placed in a hypertonic solution. Be sure to use proper terminology (4 pts).

9. Based on what you learned in this exercise, explain why salt might make a good weed killer (3 pts).

 

Week 3 Experiment Grading Rubric

Component Expectation Points
Experiment 3 Exercise 1 Interpretation of results and demonstrated understanding of diffusion (Table 2 and Questions 1-5). 18 pts
Experiment 3 Exercise 2 Demonstrates understanding of isotonic solutions and no net movement of water (Questions 1-3). 7 pts
  Demonstrates understanding of hypotonic solutions and the movement of water (Questions 4-6). 8 pts
  Demonstrates understanding of hypertonic solutions and the movement of water (Questions 7-9). 10 pts
TOTAL   43 pts
 
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